0.0
<html><body><title>AT5G38680.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u523868001000i/AT5G38680.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u523868001000i/AT5G38680.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u523868001000i/AT5G38680.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121242301000i">AT1G12423.1</a></td><td>0.851879</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125403501000i">AT1G54035.1</a></td><td>0.836144</td><td>pseudogene of epithiospecifier protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524143001000i">AT5G41430.1</a></td><td>0.835908</td><td>zinc finger (C3HC4-type RING finger) family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523622801000i">AT5G36228.1</a></td><td>0.835346</td><td>nucleic acid binding / zinc ion binding</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122149001000i">AT1G21490.1</a></td><td>0.834289</td><td>pseudogene, hypothetical protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420807401000i">AT4G08074.1</a></td><td>0.830515</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123187501000i">AT1G31875.1</a></td><td>0.810166</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523535601000i">AT5G35356.1</a></td><td>0.800387</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123203001000i">AT1G32030.1</a></td><td>0.794419</td><td>DNA binding</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u324634001000i">AT3G46340.1</a></td><td>0.787589</td><td>leucine-rich repeat protein kinase, putative</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127924501000i">AT1G79245.1</a></td><td>-0.853818</td><td>pseudogene of unknown protein</td><td>OMAT1P120875,OMAT1P120870</td><td>[OMAT1P120875]-, [OMAT1P120870]-</td><td>OMAT1P023630</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220118001000i">AT2G01180.1</a></td><td>-0.82795</td><td>ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)</td><td>OMAT2P100070</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127433001000i">AT1G74330.1</a></td><td>-0.826935</td><td>ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase</td><td>OMAT1P119060</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122078001000i">AT1G20780.1</a></td><td>-0.82404</td><td>SAUL1 (SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1)</td><td>OMAT1P007620</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121105501000i">AT1G11055.1</a></td><td>-0.805267</td><td>Encodes a defensin-like (DEFL) family protein.</td><td>-</td><td>-</td><td>OMAT1P003730</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423439001000i">AT4G34390.1</a></td><td>-0.790722</td><td>XLG2 (extra-large GTP-binding protein 2)</td><td>OMAT4P011720</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320156001000i">AT3G01560.1</a></td><td>-0.783251</td><td>proline-rich family protein</td><td>OMAT3P000280</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320588001000i">AT3G05880.1</a></td><td>-0.78276</td><td>RCI2A (RARE-COLD-INDUCIBLE 2A)</td><td>OMAT3P101930,OMAT3P101940</td><td>[OMAT3P101930]-, [OMAT3P101940]-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126626001000i">AT1G66260.1</a></td><td>-0.776956</td><td>RNA and export factor-binding protein, putative</td><td>OMAT1P116420</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125344001000i">AT1G53440.1</a></td><td>-0.774365</td><td>leucine-rich repeat family protein / protein kinase family protein</td><td>OMAT1P014790</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u523868001000i/AT5G38680.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>value</td><td>-</td><td>67/200</td><td>3.99</td><td>1.36e-24</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>transposable_element_gene</td><td>-</td><td>72/200</td><td>3.07</td><td>7.88e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>transposable</td><td>-</td><td>72/200</td><td>3.07</td><td>8.00e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>element</td><td>-</td><td>72/200</td><td>3.01</td><td>2.30e-19</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>retrotransposon</td><td>-</td><td>42/200</td><td>4.15</td><td>5.52e-16</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>polyprotein</td><td>-</td><td>24/200</td><td>6.67</td><td>3.46e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>copia</td><td>-</td><td>19/200</td><td>6.33</td><td>3.07e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ty1_copia</td><td>-</td><td>18/200</td><td>6.07</td><td>1.90e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>cacta</td><td>-</td><td>12/200</td><td>5.97</td><td>1.38e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>pseudogene</td><td>-</td><td>26/200</td><td>2.52</td><td>4.86e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>blastp</td><td>-</td><td>12/200</td><td>4.18</td><td>7.20e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>identity</td><td>-</td><td>12/200</td><td>3.67</td><td>2.86e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transposase</td><td>-</td><td>14/200</td><td>3.08</td><td>5.80e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>gypsy</td><td>-</td><td>15/200</td><td>2.81</td><td>1.01e-04</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
AT5G38680.1
without_OMAT_gene